Package: iNEXT 3.0.1
iNEXT: Interpolation and Extrapolation for Species Diversity
Provides simple functions to compute and plot two types (sample-size- and coverage-based) rarefaction and extrapolation curves for species diversity (Hill numbers) based on individual-based abundance data or sampling-unit- based incidence data; see Chao and others (2014, Ecological Monographs) for pertinent theory and methodologies, and Hsieh, Ma and Chao (2016, Methods in Ecology and Evolution) for an introduction of the R package.
Authors:
iNEXT_3.0.1.tar.gz
iNEXT_3.0.1.zip(r-4.5)iNEXT_3.0.1.zip(r-4.4)iNEXT_3.0.1.zip(r-4.3)
iNEXT_3.0.1.tgz(r-4.4-x86_64)iNEXT_3.0.1.tgz(r-4.4-arm64)iNEXT_3.0.1.tgz(r-4.3-x86_64)iNEXT_3.0.1.tgz(r-4.3-arm64)
iNEXT_3.0.1.tar.gz(r-4.5-noble)iNEXT_3.0.1.tar.gz(r-4.4-noble)
iNEXT_3.0.1.tgz(r-4.4-emscripten)iNEXT_3.0.1.tgz(r-4.3-emscripten)
iNEXT.pdf |iNEXT.html✨
iNEXT/json (API)
NEWS
| # Install 'iNEXT' in R: |
| install.packages('iNEXT', repos = c('https://johnsonhsieh.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/johnsonhsieh/inext/issues
Last updated 8 months agofrom:277d273e96. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 18 2024 |
| R-4.5-win-x86_64 | OK | Nov 18 2024 |
| R-4.5-linux-x86_64 | OK | Nov 18 2024 |
| R-4.4-win-x86_64 | OK | Nov 18 2024 |
| R-4.4-mac-x86_64 | OK | Nov 18 2024 |
| R-4.4-mac-aarch64 | OK | Nov 18 2024 |
| R-4.3-win-x86_64 | OK | Nov 18 2024 |
| R-4.3-mac-x86_64 | OK | Nov 18 2024 |
| R-4.3-mac-aarch64 | OK | Nov 18 2024 |
Exports:as.abucountas.incfreqChaoRichnessChaoShannonChaoSimpsonDataInfoestimateDggiNEXTiNEXT
Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Interpolation and extrapolation for species diversity | iNEXT-package |
| Ant data (datatype = "incidence_freq") | ant |
| Transform abundance raw data to abundance row-sum counts (iNEXT input format) | as.abucount |
| Transform incidence raw data to incidence frequencies (iNEXT input format) | as.incfreq |
| Bird data (datatype = "abundance") | bird |
| Estimation of species richness | ChaoRichness |
| Estimation of Shannon entropy/diversity | ChaoShannon |
| Estimation of Gini-Simpson index or Simpson diversity | ChaoSimpson |
| Ciliates data (datatype = "incidence_raw") | ciliates |
| Exhibit basic data information | DataInfo |
| Compute species diversity with a particular level of sample size/coverage | estimateD |
| Fortify method for classes from the iNEXT package. | fortify.iNEXT |
| ggplot2 extension for an iNEXT object | ggiNEXT ggiNEXT.default ggiNEXT.iNEXT |
| iNterpolation and EXTrapolation of Hill numbers | iNEXT |
| Plotting iNEXT object | plot.iNEXT |
| Printing iNEXT object | print.iNEXT |
| Spider data (datatype = "abundance") | spider |
